False-positive rate

FIGURE 9.3. ROC curves. Comparison of two scoring functions performance when searching ion trap MS/MS spectra against the entire Swiss-Prot database. Ly + Lint + Lsucc includes the model of ion intensities and successive fragment matches, whereas includes the model of independent fragment matches only. Scoring functions Ly and Ly + Lint + Lsucc are designed as likelihood ratios (see text).

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