Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL (2004) Gibberellins repress photomor-phogenesis in darkness. Plant Physiol 134:1050-1057

Araki T, Komeda Y (1993) Flowering in darkness in Arabidopsis thaliana. Plant J 4:801811

Benvenuto G, Formiggini F, Laflamme P, Malakhov M, Bowler C (2002) The photo-morphogenesis regulator DET1 binds the amino-terminal tail of histone H2B in a nucleosome context. Curr Biol 12:1529-1534

Bertrand C, Benhamed M, Li YF, Ayadi M, Lemonnier G, Renou JP, Delarue M, Zhou DX (2005) Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth. J Biol Chem 280:1465-1473 Borthwick HA, Hendricks SB, Parker MW, Toole EH, Toole VK (1952) A reversible photo-

reaction controlling seed germination. Proc Natl Acad Sci USA 38:662-666 Cao D, Hussain A, Cheng H, Peng J (2005) Loss of function of four DELLA genes leads to light- and gibberellin-independent seed germination in Arabidopsis. Planta 223:105113

Carabelli M, Sessa G, Baima S, Morelli G, Ruberti I (1993) The Arabidopsis Athb-2 and

Athb-4 genes are strongly induced by far-red-rich light. Plant J 4:469-479 Chatterjee M, Sparvoli S, Edmunds C, Garosi P, Findlay K, Martin C (1996) DAG, a gene required for chloroplast differentiation and palisade development in Antirrhinum ma-jus. EMBO J 15:4194-4207 Clack T, Mathews S, Sharrock RA (1994) The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. Plant Mol Biol 25:413-427 De Veylder L, Beeckman T, Inze D (2007) The ins and outs of the plant cell cycle. Nat Rev

Mol Cell Biol 8:655-665 del Pozo JC, Boniotti MB, Gutierrez C (2002) Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCFAtSKP2 pathway in response to light. Plant Cell 14:3057-3071

Devlin PF, Yanovsky MJ, Kay SA (2003) A genomic analysis of the shade avoidance response in Arabidopsis. Plant Physiol 133:1617-1629 Djakovic-Petrovic T, de Wit M, Voesenek LA, Pierik R (2007) DELLA protein function in growth responses to canopy signals. Plant J 51:117-126 Doerner P (2008) Signals and mechanisms in the control of plant growth (in this volume). Springer, Heidelberg

Doronkin S, Djagaeva I, Beckendorf SK (2003) The COP9 signalosome promotes degradation of cyclin E during early Drosophila oogenesis. Dev Cell 4:699-710 Du W, Pogoriler J (2006) Retinoblastoma family genes. Oncogene 25:5190-5200 Dugardeyn J, Van Der Straeten D (2008) Ethylene: inhibitor and stimulator of plant growth (in this volume). Springer, Heidelberg Ferjani A, Yano S, Horiguchi G, Tsukaya H (2008) Control of leaf morphogenesis by long-and short-distance signalling: differentiation of leaves into sun or shade types and compensated cell enlargement (in this volume). Springer, Heidelberg Foo E, Ross JJ, Davies NW, Reid JB, Weller JL (2006) A role for ethylene in the phytochrome-mediated control of vegetative development. Plant J 46:911-921 Gendreau E, Hofte H, Grandjean O, Brown S, Traas J (1998) Phytochrome controls the number of endoreduplication cycles in the Arabidopsis thaliana hypocotyl. Plant J 13:221-230

Gil P, Dewey E, Friml J, Zhao Y, Snowden KC, Putterill J, Palme K, Estelle M, Chory J (2001) BIG: a calossin-like protein required for polar auxin transport in Arabidopsis. Genes Dev 15:1985-1997 Halliday KJ, Fankhauser C (2003) Phytochrome-hormonal signalling networks. New Phy-tol 157:449-463

Hauser BA, Pratt LH, Cordonnier-Pratt MM (1997) Absolute quantification of five phytochrome transcripts in seedlings and mature plants of tomato (Solanum lycopersicum L.). Planta 201:379-387

Hay A, Kaur H, Phillips A, Hedden P, Hake S, Tsiantis M (2002) The gibberellin pathway mediates KNOTTED1-type homeobox function in plants with different body plans. Curr Biol 12:1557-1565 Horiguchi G, Kim GT, Tsukaya H (2005) The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana. Plant J 43:68-78 Jensen PJ, Hangarter RP, Estelle M (1998) Auxin transport is required for hypocotyl elongation in light-grown but not dark-grown Arabidopsis. Plant Physiol 116:455-462 Jiao Y, Lau OS, Deng XW (2007) Light-regulated transcriptional networks in higher plants. Nat Rev Genet 8:217-230 Khanna R, Shen Y, Toledo-Ortiz G, Kikis EA, Johannesson H, Hwang YS, Quail PH (2006) Functional profiling reveals that only a small number of phytochrome-regulated early response genes in Arabidopsis are necessary for optimal deetiolation. Plant Cell 18:21572171

Kim JH, Choi D, Kende H (2003) The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J 36:94-104 Kim WY, Fujiwara S, Suh SS, Kim J, Kim Y, Han L, David K, Putterill J, Nam HG, Somers DE (2007) ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light. Nature 449:356-360 Koornneef M, Rolff E, Spruit CJP (1980) Genetic control of light-inhibited hypocotyl elongation in Arabidopsis thaliana (L) Heynh. Z Pflanzenphysiol 100:147-160 Li J, Nagpal P, Vitart V, McMorris TC, Chory J (1996) A role for brassinosteroids in light-

dependent development of Arabidopsis. Science 272:398-401 Lin R, Wang H (2005) Two homologous ATP-binding cassette transporter proteins, At-MDR1 and AtPGP1, regulate Arabidopsis photomorphogenesis and root development by mediating polar auxin transport. Plant Physiol 138:949-964 Lopez-Juez E, Kobayashi M, Sakurai A, Kamiya Y, Kendrick RE (1995) Phytochrome, gib-berellins, and hypocotyl growth—a study using the cucumber (Cucumis Sativus L.) Long Hypocotyl mutant. Plant Physiol 107:131-140 Lopez-Juez E, Bowyer JR, Sakai T (2007) Distinct leaf developmental and gene expression responses to light quantity depend on blue-photoreceptor or plastid-derived signals, and can occur in the absence of phototropins. Planta 227:113-123 Ma L, Li J, Qu L, Hager J, Chen Z, Zhao H, Deng XW (2001) Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. Plant Cell 13:2589-2607 Ma L, Sun N, Liu X, Jiao Y, Zhao H, Deng XW (2005) Organ-specific expression of Arabidopsis genome during development. Plant Physiol 138:80-91 Masubelele NH, Dewitte W, Menges M, Maughan S, Collins C, Huntley R, Nieuwland J, Scofield S, Murray JA (2005) D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. Proc Natl Acad Sci USA 102:15694-15699 Mazzella MA, Cerdan PD, Staneloni RJ, Casal JJ (2001) Hierarchical coupling of phyto-chromes and cryptochromes reconciles stability and light modulation of Arabidopsis development. Development 128:2291-2299 Melaragno JE, Mehrotra B, Coleman AW (1993) Relationship between endopolyploidy and cell size in epidermal tissue of Arabidopsis. Plant Cell 5:1661-1668 Moore B, Zhou L, Rolland F, Hall Q, Cheng WH, Liu YX, Hwang I, Jones T, Sheen J (2003) Role of the Arabidopsis glucose sensor HXK1 in nutrient, light, and hormonal signaling. Science 300:332-336 Nemhauser JL, Chory J (2002) Photomorphogenesis. In: Somerville CR, Meyerowitz EM (eds) The Arabidopsis book. American Society of Plant Biologists, Rockville

Oh E, Yamaguchi S, Kamiya Y, Bae G, Chung WI, Choi G (2006) Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Ara-bidopsis. Plant J 47:124-139 Ohgishi M, Saji K, Okada K, Sakai T (2004) Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis. Proc Natl Acad Sci USA 101:2223-2228 Osterlund MT, Hardtke CS, Wei N, Deng XW (2000) Targeted destabilization of HY5

during light-regulated development of Arabidopsis. Nature 405:462-466 Oyama T, Shimura Y, Okada K (1997) The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev 11:2983-2995

Reed JW, Foster KR, Morgan PW, Chory J (1996) Phytochrome B affects responsiveness to gibberellins in Arabidopsis. Plant Physiol 112:337-342 Roig-Villanova I, Bou-Torrent J, Galstyan A, Carretero-Paulet L, Portoles S, Rodriguez-Concepcion M, Martinez-Garcia JF (2007) Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins. EMBO J 26:4756-4767 Roldan M, Gomez-Mena C, Ruiz-Garcia L, Salinas J, Martinez-Zapater JM (1999) Sucrose availability on the aerial part of the plant promotes morphogenesis and flowering of Arabidopsis in the dark. Plant J 20:581-590 Salisbury FJ, Hall A, Grierson CS, Halliday KJ (2007) Phytochrome coordinates Arabidop-

sis shoot and root development. Plant J 50:429-438 Schuerger AC, Brown CS, Stryjewski EC (1997) Anatomical features of pepper plants (Capsicum annuum L.) grown under red light-emitting diodes supplemented with blue or far-red light. Ann Bot 79:273-282 Shinkle JR, Kadakia R, Jones AM (1998) Dim-red-light-induced increase in polar auxin transport in cucumber seedlings. I. Development of altered capacity, velocity, and response to inhibitors. Plant Physiol 116:1505-1513 Shinomura T, Nagatani A, Hanzawa H, Kubota M, Watanabe M, Furuya M (1996) Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc Natl Acad Sci USA 93:8129-8133 Sibout R, Sukumar P, Hettiarachchi C, Holm M, Muday GK, Hardtke CS (2006) Opposite root growth phenotypes of hy5 versus hy5 hyh mutants correlate with increased constitutive auxin signaling. PLoS Genet 2:1898-1911 Sugimoto-Shirasu K, Stacey NJ, Corsar J, Roberts K, McCann MC (2002) DNA topoiso-

merase VI is essential for endoreduplication in Arabidopsis. Curr Biol 12:1782-1786 Takemiya A, Inoue S, Doi M, Kinoshita T, Shimazaki K (2005) Phototropins promote plant growth in response to blue light in low light environments. Plant Cell 17:1120-1127 Tan W, Bögre L, Lopez-Juez E (2007) Light fluence rate and chloroplasts are sources of signals controlling mesophyll cell morphogenesis and division. Cell Biol Int. doi: 10.1016/jcellbi.2007.11.011 (in press) Tian Q, Uhlir NJ, Reed JW (2002) Arabidopsis SHY2/IAA3 inhibits auxin-regulated gene expression. Plant Cell 14:301-319 Tsumoto Y, Yoshizumi T, Kuroda H, Kawashima M, Ichikawa T, Nakazawa M, Ya-mamoto N, Matsui M (2006) Light-dependent polyploidy control by a CUE protein variant in Arabidopsis. Plant Mol Biol 61:817-828 van der Knaap E, Jagoueix S, Kende H (1997) Expression of an ortholog of replication protein A1 (RPA1) is induced by gibberellin in deepwater rice. Proc Natl Acad Sci USA 94:9979-9983

van der Knaap E, Kim JH, Kende H (2000) A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth. Plant Physiol 122:695-704

Walters RG (2005) Towards an understanding of photosynthetic acclimation. J Exp Bot 56:435-447

Wei N, Deng XW (2003) The COP9 signalosome. Annu Rev Cell Dev Biol 19:261-286 Weston E, Thorogood K, Vinti G, Lopez-Juez E (2000) Light quantity controls leaf-cell and chloroplast development in Arabidopsis thaliana wild type and blue-light-perception mutants. Planta 211:807-815 Whitelam G, Halliday K (2007) Light and plant development. Blackwell, Oxford Wyrzykowska J, Schorderet M, Pien S, Gruissem W, Fleming AJ (2006) Induction of differentiation in the shoot apical meristem by transient overexpression of a retinoblastoma-related protein. Plant Physiol 141:1338-1348 Yamaguchi S, Smith MW, Brown RG, Kamiya Y, Sun T (1998) Phytochrome regulation and differential expression of gibberellin 3beta-hydroxylase genes in germinating Ara-bidopsis seeds. Plant Cell 10:2115-2126 Yanagawa Y, Sullivan JA, Komatsu S, Gusmaroli G, Suzuki G, Yin JN, Ishibashi T, Saijo Y, Rubio V, Kimura S, Wang J, Deng XW (2004) Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes. Genes Dev 18:2172-2181 Yano S, Terashima I (2001) Separate localization of light signal perception for sun or shade type chloroplast and palisade tissue differentiation in Chenopodium album. Plant Cell Physiol 42:1303-1310 Yanovsky MJ, Kay SA (2003) Living by the calendar: how plants know when to flower. Nat Rev Mol Cell Biol 4:265-275

Plant Cell Monogr (10)

L. Bogre and G. Beemster: Plant Growth Signaling

DOI 10.1007/7089_2007_139/Published online: 27 November 2007

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